| Id | Element | Ion | Binding family | Amino acids or nucleotide residues names | All bound residues | Is homomer | Number of bound amino acids or nucleotide residues | Number of all bound residues | Number of coordinating chains | Representative |
|---|---|---|---|---|---|---|---|---|---|---|
| 1Q3I-NI-1 | NI | Ni²⁺ | H6 | HIS. | HIS. | ✔ | 6 | 6 | 3 | ✔ |
| 1Q3I-NI-2 | NI | Ni²⁺ | H6 | HIS. | HIS. | ✔ | 6 | 6 | 3 | ✔ |
| 6J6F-NI-1 | NI | Ni²⁺ | H2 | HIS. | HIS. | ✔ | 2 | 2 | 2 | ✔ |
| 6N97-NI-1 | NI | Ni²⁺ | H3 | HIS. | HIS. | ✔ | 3 | 3 | 3 | ✔ |
| 6N97-NI-2 | NI | Ni²⁺ | H3 | HIS. | HIS. | ✔ | 3 | 3 | 3 | ✘ |
| 2C7V-NI-1 | NI | Ni²⁺ | H2 | HIS. | HIS. | ✔ | 2 | 2 | 2 | ✔ |
| 2C7V-NI-2 | NI | Ni²⁺ | H2 | HIS. | HIS. | ✔ | 2 | 2 | 2 | ✘ |
| 2CAJ-NI-1 | NI | Ni²⁺ | H2 | HIS. | HIS. | ✔ | 2 | 2 | 2 | ✔ |
| 2CAJ-NI-2 | NI | Ni²⁺ | H2 | HIS. | HIS. | ✔ | 2 | 2 | 2 | ✘ |
| 2CAJ-NI-3 | NI | Ni²⁺ | H2 | HIS. | HIS. | ✔ | 2 | 2 | 2 | ✘ |
| 2CAJ-NI-4 | NI | Ni²⁺ | H2 | HIS. | HIS. | ✔ | 2 | 2 | 2 | ✘ |
| 1MN0-NI-1 | NI | Ni²⁺ | D2 | ASP. | ASP.HOH. | ✔ | 2 | 5 | 2 | ✘ |
| 3H56-CU-1 | CU | Cu²⁺ | H3 | HIS. | HIS. | ✔ | 3 | 3 | 2 | ✘ |
| 3H56-CU-2 | CU | Cu²⁺ | H3 | HIS. | HIS. | ✔ | 3 | 3 | 2 | ✘ |
| 3H56-CU-3 | CU | Cu²⁺ | H3 | HIS. | HIS. | ✔ | 3 | 3 | 2 | ✘ |
| 3K7R-CU-1 | CU | Cu²⁺ | C3 | CYS. | 4SM.CYS. | ✔ | 3 | 3 | 3 | ✔ |
| 3K7R-CU-2 | CU | Cu²⁺ | C3 | CYS. | CYS. | ✔ | 3 | 3 | 3 | ✘ |
| 2ZWN-CU-1 | CU | Cu²⁺ | H2 | HIS. | HIS. | ✔ | 2 | 2 | 2 | ✔ |
| 2ZCU-CU-1 | CU | Cu²⁺ | E2 | GLU. | GLU.HOH. | ✔ | 2 | 3 | 2 | ✔ |
| 2ZCU-CU-2 | CU | Cu²⁺ | E2 | GLU. | GLU.HOH. | ✔ | 2 | 3 | 2 | ✘ |