| Id | Element | Ion | Binding family | Amino acids or nucleotide residues names | All bound residues | Is homomer | Number of bound amino acids or nucleotide residues | Number of all bound residues | Number of coordinating chains | Representative |
|---|---|---|---|---|---|---|---|---|---|---|
| 6BWR-NI-1 | NI | Ni²⁺ | D1E1 | ASP.GLU. | ASP.GLU.HOH. | ✔ | 2 | 3 | 2 | ✔ |
| 6BWR-NI-2 | NI | Ni²⁺ | D1E1 | ASP.GLU. | ASP.GLU.HOH. | ✔ | 2 | 3 | 2 | ✘ |
| 6BWR-NI-3 | NI | Ni²⁺ | D1E1 | ASP.GLU. | ASP.GLU.HOH. | ✔ | 2 | 3 | 2 | ✘ |
| 6WV2-NI-1 | NI | Ni²⁺ | H6 | HIS. | HIS. | ✔ | 6 | 6 | 3 | ✔ |
| 5UDW-NI-1 | NI | Ni²⁺ | D3 | ASP. | ASP.HOH. | ✔ | 3 | 4 | 3 | ✘ |
| 5UDW-NI-2 | NI | Ni²⁺ | D3 | ASP. | ASP.HOH. | ✔ | 3 | 4 | 3 | ✘ |
| 1F9Z-NI-1 | NI | Ni²⁺ | E2 | GLU. | GLU.HOH. | ✔ | 2 | 4 | 2 | ✔ |
| 1F9Z-NI-2 | NI | Ni²⁺ | E2 | GLU. | GLU.HOH. | ✔ | 2 | 4 | 2 | ✘ |
| 6T6I-NI-1 | NI | Ni²⁺ | H6 | HIS. | HIS. | ✔ | 6 | 6 | 3 | ✘ |
| 6T6J-NI-1 | NI | Ni²⁺ | H3 | HIS. | HIS. | ✔ | 3 | 3 | 3 | ✔ |
| 6T6J-NI-2 | NI | Ni²⁺ | H6 | HIS. | HIS. | ✔ | 6 | 6 | 3 | ✔ |
| 6R7D-NI-1 | NI | Ni²⁺ | H6 | HIS. | HIS. | ✔ | 6 | 6 | 3 | ✘ |
| 6WXA-NI-1 | NI | Ni²⁺ | H6 | HIS. | HIS. | ✔ | 6 | 6 | 3 | ✘ |
| 6WWX-NI-1 | NI | Ni²⁺ | H5 | HIS. | HIS. | ✔ | 5 | 5 | 3 | ✘ |
| 6YN7-NI-1 | NI | Ni²⁺ | E2 | GLU. | GLU. | ✔ | 2 | 2 | 2 | ✔ |
| 1NS2-NI-1 | NI | Ni²⁺ | D2 | ASP. | ASP.HOH. | ✔ | 2 | 5 | 2 | ✘ |
| 1H5Q-NI-1 | NI | Ni²⁺ | W2 | TRP. | HOH.TRP. | ✔ | 2 | 6 | 2 | ✔ |
| 1H5Q-NI-2 | NI | Ni²⁺ | W2 | TRP. | HOH.TRP. | ✔ | 2 | 6 | 2 | ✘ |
| 1EF8-NI-1 | NI | Ni²⁺ | H3 | HIS. | HIS. | ✔ | 3 | 3 | 3 | ✘ |
| 1EF8-NI-2 | NI | Ni²⁺ | H3 | HIS. | HIS. | ✔ | 3 | 3 | 3 | ✘ |