| Id | Element | Ion | Binding family | Amino acids or nucleotide residues names | All bound residues | Is homomer | Number of bound amino acids or nucleotide residues | Number of all bound residues | Number of coordinating chains | Representative |
|---|---|---|---|---|---|---|---|---|---|---|
| 2BJ7-NI-2 | NI | Ni²⁺ | D2 | ASP. | ASP. | ✔ | 2 | 2 | 2 | ✘ |
| 2BJ7-NI-3 | NI | Ni²⁺ | D2 | ASP. | ASP.HOH. | ✔ | 2 | 4 | 2 | ✘ |
| 2BJ7-NI-4 | NI | Ni²⁺ | D2 | ASP. | ASP.HOH. | ✔ | 2 | 4 | 2 | ✘ |
| 1XU2-NI-1 | NI | Ni²⁺ | H3 | HIS. | HIS. | ✔ | 3 | 3 | 3 | ✔ |
| 5Y9R-CD-1 | CD | Cd²⁺ | D1E1 | ASP.GLU. | ASP.GLU.HOH. | ✔ | 2 | 3 | 2 | ✔ |
| 5XGF-NI-1 | NI | Ni²⁺ | D1G1 | ASP.GLY. | ASP.GLY.HOH. | ✔ | 2 | 5 | 2 | ✔ |
| 5XGF-NI-2 | NI | Ni²⁺ | D1G1 | ASP.GLY. | ASP.GLY.HOH. | ✔ | 2 | 5 | 2 | ✘ |
| 5XKT-NI-1 | NI | Ni²⁺ | C2 | CYS. | CYS. | ✔ | 2 | 2 | 2 | ✔ |
| 6CT8-NI-1 | NI | Ni²⁺ | H6 | HIS. | HIS. | ✔ | 6 | 6 | 3 | ✔ |
| 6DK8-NI-1 | NI | Ni²⁺ | H2 | HIS. | HIS. | ✔ | 2 | 2 | 2 | ✘ |
| 6DK8-NI-2 | NI | Ni²⁺ | H2 | HIS. | HIS. | ✔ | 2 | 2 | 2 | ✔ |
| 6F5N-NI-1 | NI | Ni²⁺ | E2 | GLU. | GLU.HOH. | ✔ | 2 | 4 | 2 | ✔ |
| 6BN1-NI-1 | NI | Ni²⁺ | D1L1 | ASP.LEU. | ASP.LEU. | ✘ | 2 | 2 | 2 | ✔ |
| 6BN1-NI-2 | NI | Ni²⁺ | D1L1 | ASP.LEU. | ASP.LEU. | ✘ | 2 | 2 | 2 | ✘ |
| 4RLE-NI-1 | NI | Ni²⁺ | H6 | HIS. | HIS. | ✔ | 6 | 6 | 3 | ✔ |
| 5FSH-NI-1 | NI | Ni²⁺ | N2 | ASN. | ASN. | ✔ | 2 | 2 | 2 | ✔ |
| 5FSH-NI-2 | NI | Ni²⁺ | E2 | GLU. | GLU. | ✔ | 2 | 2 | 2 | ✔ |
| 4X68-NI-1 | NI | Ni²⁺ | D2 | ASP. | ASP. | ✔ | 2 | 2 | 2 | ✔ |
| 5FPX-NI-1 | NI | Ni²⁺ | G1Q1 | GLN.GLY. | GLN.GLY. | ✘ | 2 | 2 | 2 | ✔ |
| 5FPX-NI-2 | NI | Ni²⁺ | G1Q1 | GLN.GLY. | GLN.GLY. | ✘ | 2 | 2 | 2 | ✘ |