| Id | Element | Ion | Binding family | Amino acids or nucleotide residues names | All bound residues | Is homomer | Number of bound amino acids or nucleotide residues | Number of all bound residues | Number of coordinating chains | Representative |
|---|---|---|---|---|---|---|---|---|---|---|
| 5TYF-NA-2 | NA | Na⁺ | I1T2V1 | DT.ILE.THR.VAL. | DT.HOH.ILE.THR.VAL. | ✘ | 4 | 6 | 2 | ✘ |
| 5V0D-NA-1 | NA | Na⁺ | I1S2T1 | DT.ILE.SER. | DT.HOH.ILE.SER. | ✘ | 4 | 6 | 2 | ✔ |
| 5V08-NA-1 | NA | Na⁺ | I1S2T1 | DT.ILE.SER. | DT.HOH.ILE.SER. | ✘ | 4 | 5 | 2 | ✔ |
| 5T14-MG-1 | MG | Mg²⁺ | A1I1R1V1 | ARG.DA.ILE.VAL. | ARG.DA.HOH.ILE.VAL. | ✘ | 4 | 5 | 2 | ✔ |
| 5T4Y-MG-1 | MG | Mg²⁺ | E1N2S1Y1 | ASN.GLU.SER.TYR. | ASN.GLU.SER.TYR. | ✘ | 5 | 5 | 2 | ✘ |
| 5T4Y-MG-2 | MG | Mg²⁺ | E1N2S1Y1 | ASN.GLU.SER.TYR. | ASN.GLU.SER.TYR. | ✘ | 5 | 5 | 2 | ✔ |
| 5T96-MG-1 | MG | Mg²⁺ | D3 | ASP. | ASP.HOH. | ✔ | 3 | 6 | 3 | ✔ |
| 5T9Y-MG-1 | MG | Mg²⁺ | D3 | ASP. | ASP.HOH. | ✔ | 3 | 6 | 3 | ✔ |
| 5RVX-MG-1 | MG | Mg²⁺ | E2 | GLU. | GLU.HOH. | ✔ | 2 | 6 | 2 | ✘ |
| 5RVW-MG-1 | MG | Mg²⁺ | E2 | GLU. | GLU.HOH. | ✔ | 2 | 6 | 2 | ✔ |
| 5RW1-MG-1 | MG | Mg²⁺ | E2 | GLU. | GLU.HOH. | ✔ | 2 | 6 | 2 | ✔ |
| 5RW0-MG-1 | MG | Mg²⁺ | E2 | GLU. | GLU.HOH. | ✔ | 2 | 6 | 2 | ✘ |
| 5RVZ-MG-1 | MG | Mg²⁺ | E2 | GLU. | GLU.HOH. | ✔ | 2 | 6 | 2 | ✘ |
| 5RVY-MG-1 | MG | Mg²⁺ | E2 | GLU. | GLU.HOH. | ✔ | 2 | 6 | 2 | ✘ |
| 5OED-MG-1 | MG | Mg²⁺ | E1T1 | GLU.THR. | GDP.GLU.HOH.THR. | ✘ | 2 | 6 | 2 | ✔ |
| 5OI2-MG-1 | MG | Mg²⁺ | Q1Y1 | GLN.TYR. | HOH.ILE. | ✔ | 2 | 2 | 2 | ✔ |
| 5OI2-MG-2 | MG | Mg²⁺ | Q1Y1 | GLN.TYR. | HOH.ILE. | ✔ | 2 | 2 | 2 | ✘ |
| 5O7U-MG-1 | MG | Mg²⁺ | A1V1 | ALA.VAL. | ALA.HOH.VAL. | ✔ | 2 | 6 | 2 | ✔ |
| 5O7U-MG-2 | MG | Mg²⁺ | A1V1 | ALA.VAL. | ALA.HOH.VAL. | ✔ | 2 | 6 | 2 | ✔ |
| 5O7U-MG-3 | MG | Mg²⁺ | A1V1 | ALA.VAL. | ALA.HOH.VAL. | ✔ | 2 | 6 | 2 | ✘ |