| Id | Element | Ion | Binding family | Amino acids or nucleotide residues names | All bound residues | Is homomer | Number of bound amino acids or nucleotide residues | Number of all bound residues | Number of coordinating chains | Representative |
|---|---|---|---|---|---|---|---|---|---|---|
| 4YA2-MG-4 | MG | Mg²⁺ | D2I1S1 | ASP.ILE.SER. | ASP.ILE.SER. | ✘ | 4 | 4 | 2 | ✘ |
| 4YA3-MG-1 | MG | Mg²⁺ | A1D2S1 | ALA.ASP.SER. | ALA.ASP.HOH.SER. | ✘ | 4 | 5 | 2 | ✘ |
| 4YA3-MG-2 | MG | Mg²⁺ | D2I1S1 | ASP.ILE.SER. | ASP.HOH.ILE.SER. | ✘ | 4 | 5 | 2 | ✘ |
| 4YA3-MG-3 | MG | Mg²⁺ | A1D2S1 | ALA.ASP.SER. | ALA.ASP.SER. | ✘ | 4 | 4 | 2 | ✘ |
| 4YB4-MG-1 | MG | Mg²⁺ | D2 | ASP. | 48Y.ASP.HOH. | ✔ | 2 | 5 | 2 | ✔ |
| 4YB4-MG-2 | MG | Mg²⁺ | D2 | ASP. | 48Y.ASP.HOH. | ✔ | 2 | 5 | 2 | ✔ |
| 4YB4-MG-3 | MG | Mg²⁺ | D2 | ASP. | 48Y.ASP.HOH. | ✔ | 2 | 5 | 2 | ✘ |
| 4YB4-MG-4 | MG | Mg²⁺ | D2 | ASP. | 48Y.ASP.HOH. | ✔ | 2 | 5 | 2 | ✘ |
| 4YBZ-MG-1 | MG | Mg²⁺ | D1X1 | ASP.NEP. | ASP.NEP. | ✔ | 2 | 2 | 2 | ✔ |
| 5E63-MG-1 | MG | Mg²⁺ | A1C1D1E1T2 | ASP.DA.DC.DT.GLU. | ASP.DA.DC.DT.GLU. | ✘ | 6 | 6 | 5 | ✔ |
| 5E63-MG-2 | MG | Mg²⁺ | C1G1 | DC.GLY. | DC.GLY. | ✘ | 2 | 2 | 2 | ✔ |
| 5E5S-MG-1 | MG | Mg²⁺ | A1D1T2 | ALA.ASP.DT. | ALA.ASP.DT.HOH. | ✘ | 4 | 6 | 3 | ✔ |
| 5DX9-MG-1 | MG | Mg²⁺ | D2N1X1 | ASN.ASP.G6P. | ASN.ASP.G6P.HOH. | ✘ | 4 | 6 | 2 | ✔ |
| 5EOZ-NA-1 | NA | Na⁺ | G1I1T1V1 | DG.ILE.THR.VAL. | DG.HOH.ILE.THR.VAL. | ✘ | 4 | 5 | 2 | ✘ |
| 5EOZ-NA-2 | NA | Na⁺ | C1K1L1V1 | DC.LEU.LYS.VAL. | DC.HOH.LEU.LYS.VAL. | ✘ | 4 | 6 | 2 | ✘ |
| 5EPU-NA-1 | NA | Na⁺ | E2I2S2 | GLU.ILE.SER. | GLU.ILE.SER. | ✔ | 6 | 6 | 2 | ✘ |
| 5EPU-NA-2 | NA | Na⁺ | E2I2S2 | GLU.ILE.SER. | GLU.ILE.SER. | ✔ | 6 | 6 | 2 | ✔ |
| 5EPU-NA-3 | NA | Na⁺ | E2I2S2 | GLU.ILE.SER. | GLU.ILE.SER. | ✔ | 6 | 6 | 2 | ✘ |
| 5F3R-MG-1 | MG | Mg²⁺ | D2 | ASP. | ASP.HOH. | ✔ | 2 | 6 | 2 | ✔ |
| 5F49-MG-1 | MG | Mg²⁺ | D1E1F1 | ASP.GLU.PHE. | ASN.HOH. | ✔ | 3 | 6 | 3 | ✔ |