| Id | Element | Ion | Binding family | Amino acids or nucleotide residues names | All bound residues | Is homomer | Number of bound amino acids or nucleotide residues | Number of all bound residues | Number of coordinating chains | Representative |
|---|---|---|---|---|---|---|---|---|---|---|
| 3PML-MG-1 | MG | Mg²⁺ | C1D3 | ASP.DC. | 1GC.ASP.DC.HOH. | ✘ | 4 | 6 | 2 | ✘ |
| 3PNL-MG-2 | MG | Mg²⁺ | D2F1 | ASP.PHE. | ADP.ASP.HOH.PHE. | ✘ | 3 | 5 | 2 | ✘ |
| 3PUG-K-1 | K | K⁺ | M1S2 | MET.SER. | MET.SER. | ✔ | 3 | 3 | 2 | ✘ |
| 3PUG-K-2 | K | K⁺ | M1S2 | MET.SER. | MET.SER. | ✔ | 3 | 3 | 2 | ✘ |
| 3PUG-K-3 | K | K⁺ | M1S2 | MET.SER. | MET.SER. | ✔ | 3 | 3 | 2 | ✘ |
| 3PUG-K-4 | K | K⁺ | M1S2 | MET.SER. | MET.SER. | ✔ | 3 | 3 | 2 | ✘ |
| 3PUG-K-5 | K | K⁺ | M1S2 | MET.SER. | MET.SER. | ✔ | 3 | 3 | 2 | ✘ |
| 3PUG-K-6 | K | K⁺ | M1S2 | MET.SER. | MET.SER. | ✔ | 3 | 3 | 2 | ✘ |
| 3Q8R-MG-1 | MG | Mg²⁺ | C1I2K1 | DC.ILE.LYS. | DC.HOH.ILE.LYS. | ✘ | 4 | 6 | 2 | ✘ |
| 3Q8S-MG-1 | MG | Mg²⁺ | C1I2K1 | DC.ILE.LYS. | DC.HOH.ILE.LYS. | ✘ | 4 | 6 | 2 | ✘ |
| 3R1I-MG-2 | MG | Mg²⁺ | P2 | PRO. | HOH.PRO. | ✔ | 2 | 6 | 2 | ✘ |
| 3ESJ-MG-1 | MG | Mg²⁺ | E3 | GLU. | GLU. | ✔ | 3 | 3 | 3 | ✘ |
| 3F73-MG-1 | MG | Mg²⁺ | A1T1V1 | DA.DT.VAL. | DA.DT.VAL. | ✘ | 3 | 3 | 2 | ✘ |
| 3EUE-MG-2 | MG | Mg²⁺ | D1S1 | ASP.SER. | ASP.SER. | ✔ | 2 | 2 | 2 | ✘ |
| 3FD5-MG-2 | MG | Mg²⁺ | D1Q1 | ASP.GLN. | AP2.ASP.GLN.HOH.PO4. | ✔ | 2 | 5 | 2 | ✘ |
| 3FHA-CA-2 | CA | Ca²⁺ | A1E2 | ALA.GLU. | ALA.GLU.HOH. | ✔ | 3 | 6 | 2 | ✘ |
| 3FSX-MG-1 | MG | Mg²⁺ | D3 | ASP. | ASP.HOH. | ✔ | 3 | 6 | 3 | ✘ |
| 3FSX-MG-2 | MG | Mg²⁺ | E3 | GLU. | GLU. | ✔ | 3 | 3 | 3 | ✘ |
| 3H9F-MG-2 | MG | Mg²⁺ | X2 | TPO. | TPO. | ✔ | 2 | 2 | 2 | ✘ |
| 3H9F-MG-3 | MG | Mg²⁺ | X2 | TPO. | TPO. | ✔ | 2 | 2 | 2 | ✘ |