| Id | Element | Ion | Binding family | Amino acids or nucleotide residues names | All bound residues | Is homomer | Number of bound amino acids or nucleotide residues | Number of all bound residues | Number of coordinating chains | Representative |
|---|---|---|---|---|---|---|---|---|---|---|
| 6NIZ-AG-2 | AG | Ag⁺ | A1C1 | DA.DC. | DA.DC. | ✔ | 2 | 2 | 2 | ✔ |
| 3V9S-MG-2 | MG | Mg²⁺ | A1C1D1 | ASP.DA.DC. | ASP.DA.DC.HOH. | ✘ | 3 | 5 | 2 | ✘ |
| 5A78-MG-2 | MG | Mg²⁺ | A1C1D1 | ALA.ASP.DC. | ALA.ASP.DC. | ✘ | 3 | 3 | 3 | ✘ |
| 5E67-MG-1 | MG | Mg²⁺ | A1C1D1 | ALA.ASP.DC. | ALA.ASP.DC.HOH. | ✘ | 3 | 5 | 2 | ✔ |
| 6DBO-CA-1 | CA | Ca²⁺ | A1C1D1 | ASP.DA.DC. | ASP.DA.DC. | ✘ | 3 | 3 | 2 | ✔ |
| 6DBO-CA-2 | CA | Ca²⁺ | A1C1D1 | ASP.DA.DC. | ASP.DA.DC. | ✘ | 3 | 3 | 2 | ✔ |
| 6DBR-CA-1 | CA | Ca²⁺ | A1C1D1 | ASP.DA.DC. | ASP.DA.DC. | ✘ | 3 | 3 | 2 | ✔ |
| 4FZY-NA-3 | NA | Na⁺ | A1C1D1 | ASP.DA.DC. | ASP.DA.DC.HOH. | ✘ | 3 | 6 | 2 | ✔ |
| 6EKO-CA-1 | CA | Ca²⁺ | A1C1D1 | ALA.ASP.DC. | ALA.ASP.DC.HOH. | ✘ | 3 | 5 | 2 | ✔ |
| 6EKO-CA-2 | CA | Ca²⁺ | A1C1D1 | ALA.ASP.DC. | ALA.ASP.DC.HOH. | ✘ | 3 | 5 | 2 | ✘ |
| 4E7K-MN-1 | MN | Mn²⁺ | A1C1D1E1 | ASP.DA.DC.GLU. | ASP.DA.DC.GLU. | ✘ | 4 | 4 | 3 | ✔ |
| 4E7K-MN-2 | MN | Mn²⁺ | A1C1D1E1 | ASP.DA.DC.GLU. | ASP.DA.DC.GLU. | ✘ | 4 | 4 | 3 | ✔ |
| 6QTP-MN-1 | MN | Mn²⁺ | A1C1D1E1 | ASP.DA.DC.GLU. | ASP.DA.DC.GLU.HOH. | ✘ | 4 | 6 | 2 | ✔ |
| 5Y7G-CA-2 | CA | Ca²⁺ | A1C1D1E1 | ASP.DA.DC.GLU. | ASP.DA.DC.GLU. | ✘ | 4 | 4 | 2 | ✔ |
| 6UKI-CA-1 | CA | Ca²⁺ | A1C1D1E1 | ALA.ASP.DC.GLU. | ALA.ASP.DC.GLU.HOH. | ✘ | 4 | 5 | 2 | ✔ |
| 6UKH-CA-1 | CA | Ca²⁺ | A1C1D1E1 | ALA.ASP.DC.GLU. | ALA.ASP.DC.GLU. | ✘ | 4 | 4 | 2 | ✘ |
| 4R89-MN-2 | MN | Mn²⁺ | A1C1D1E1 | ASP.DA.DC.GLU. | ASP.DA.DC.GLU. | ✘ | 4 | 4 | 2 | ✔ |
| 6BCT-CA-3 | CA | Ca²⁺ | A1C1D1E1G1T1 | ASP.DA.DC.DG.DT.GLU. | ASP.DA.DC.DG.DT.GLU. | ✘ | 6 | 6 | 3 | ✘ |
| 6BCN-CA-3 | CA | Ca²⁺ | A1C1D1E1G1T1 | ASP.DA.DC.DG.DT.GLU. | ASP.DA.DC.DG.DT.GLU. | ✘ | 6 | 6 | 3 | ✘ |
| 5E63-MG-1 | MG | Mg²⁺ | A1C1D1E1T2 | ASP.DA.DC.DT.GLU. | ASP.DA.DC.DT.GLU. | ✘ | 6 | 6 | 5 | ✔ |