| Id | Element | Ion | Binding family | Amino acids or nucleotide residues names | All bound residues | Is homomer | Number of bound amino acids or nucleotide residues | Number of all bound residues | Number of coordinating chains | Representative |
|---|---|---|---|---|---|---|---|---|---|---|
| 4BRF-MG-1 | MG | Mg²⁺ | S2 | SER. | HOH.SER. | ✔ | 2 | 5 | 2 | ✔ |
| 5TPI-NA-1 | NA | Na⁺ | S2 | SER. | HOH.SER. | ✔ | 2 | 6 | 2 | ✔ |
| 6JPR-NA-2 | NA | Na⁺ | S2 | SER. | HOH.SER. | ✔ | 2 | 4 | 2 | ✔ |
| 6W3O-NA-1 | NA | Na⁺ | S2 | SER. | SER. | ✔ | 2 | 2 | 2 | ✔ |
| 1TXK-NA-1 | NA | Na⁺ | S2 | SER. | HOH.SER. | ✔ | 2 | 4 | 2 | ✔ |
| 1DTY-NA-1 | NA | Na⁺ | S2 | SER. | SER. | ✔ | 2 | 2 | 2 | ✔ |
| 4LNM-CA-1 | CA | Ca²⁺ | S2 | SER. | HOH.SER. | ✔ | 2 | 4 | 2 | ✔ |
| 4LNM-CA-2 | CA | Ca²⁺ | S2 | SER. | HOH.SER. | ✔ | 2 | 4 | 2 | ✘ |
| 1DFX-CA-1 | CA | Ca²⁺ | S2 | SER. | HOH.SER. | ✔ | 2 | 4 | 2 | ✔ |
| 1LOM-CA-1 | CA | Ca²⁺ | S2 | SER. | HOH.SER. | ✔ | 2 | 3 | 2 | ✔ |
| 1LOM-CA-2 | CA | Ca²⁺ | S2 | SER. | HOH.SER. | ✔ | 2 | 3 | 2 | ✘ |
| 3U8V-NI-1 | NI | Ni²⁺ | S2 | SER. | SER. | ✔ | 2 | 2 | 2 | ✔ |
| 7VOX-MG-1 | MG | Mg²⁺ | S2 | SER. | SER. | ✔ | 2 | 2 | 2 | ✔ |
| 7BBG-NA-1 | NA | Na⁺ | S2 | SER. | SER. | ✘ | 2 | 2 | 2 | ✔ |
| 7OPH-K-3 | K | K⁺ | S2 | SER. | THR.VAL. | ✔ | 2 | 8 | 2 | ✔ |
| 7OPH-K-4 | K | K⁺ | S2 | SER. | SER. | ✔ | 2 | 2 | 2 | ✔ |
| 7VWD-NA-2 | NA | Na⁺ | S2 | SER. | SER. | ✔ | 2 | 2 | 2 | ✘ |