| Id | Element | Ion | Binding family | Amino acids or nucleotide residues names | All bound residues | Is homomer | Number of bound amino acids or nucleotide residues | Number of all bound residues | Number of coordinating chains | Representative |
|---|---|---|---|---|---|---|---|---|---|---|
| 6A4B-MG-3 | MG | Mg²⁺ | D2E1T1 | ASP.DT.GLU. | ASP.DT.GLU. | ✘ | 4 | 4 | 2 | ✔ |
| 6UI2-MG-1 | MG | Mg²⁺ | D2E1T1 | ASP.DT.GLU. | 0KX.ASP.DT.GLU. | ✘ | 4 | 5 | 2 | ✔ |
| 7M7Q-MG-1 | MG | Mg²⁺ | D2E1T1 | ASP.DT.GLU. | ASP.DT.DZ4.GLU.HOH. | ✘ | 4 | 6 | 2 | ✘ |
| 7M7O-MG-1 | MG | Mg²⁺ | D2E1T1 | ASP.DT.GLU. | ASP.DT.DZ4.GLU.HOH. | ✘ | 4 | 6 | 2 | ✔ |
| 6PLC-MG-1 | MG | Mg²⁺ | D2E1T1 | ASP.DT.GLU. | ASP.DT.GLU.HOH.XG4. | ✘ | 4 | 6 | 2 | ✔ |
| 6PL8-MG-1 | MG | Mg²⁺ | D2E1T1 | ASP.DT.GLU. | 1FZ.ASP.DT.GLU.HOH. | ✘ | 4 | 6 | 2 | ✔ |
| 6Q02-MG-1 | MG | Mg²⁺ | D2E1T1 | ASP.DT.GLU. | ASP.DT.DZ4.GLU.HOH. | ✘ | 4 | 6 | 2 | ✔ |
| 6PZ3-MG-1 | MG | Mg²⁺ | D2E1T1 | ASP.DT.GLU. | ASP.DT.GLU.HOH.XG4. | ✘ | 4 | 6 | 2 | ✘ |
| 5DQG-MG-1 | MG | Mg²⁺ | D2E1T1 | ASP.DT.GLU. | ASP.DT.DZ4.GLU.HOH. | ✘ | 4 | 6 | 2 | ✔ |
| 5DQH-MG-1 | MG | Mg²⁺ | D2E1T1 | ASP.DT.GLU. | ASP.DT.GLU.HOH.XG4. | ✘ | 4 | 6 | 2 | ✔ |
| 3Q8K-SM-1 | SM | Sm³⁺ | D2E1T1 | ASP.DT.GLU. | ASP.DT.GLU.HOH.OH. | ✘ | 4 | 6 | 2 | ✔ |
| 5K97-SM-2 | SM | Sm³⁺ | D2E1T1 | ASP.DT.GLU. | GLU.HOH. | ✘ | 4 | 3 | 2 | ✔ |
| 1D9F-ZN-1 | ZN | Zn²⁺ | D2E1T1 | ASP.DT.GLU. | ASP.DT.GLU. | ✘ | 4 | 4 | 2 | ✔ |
| 4FZX-NA-4 | NA | Na⁺ | D2E1T1 | ASP.DT.GLU. | ASP.DT.GLU. | ✘ | 4 | 4 | 2 | ✔ |
| 2JEI-CA-1 | CA | Ca²⁺ | D2E1T1 | ASP.DT.GLU. | DGT.DT.HOH. | ✘ | 4 | 3 | 2 | ✔ |
| 2D0P-CA-1 | CA | Ca²⁺ | D2E1T1 | ASP.GLU.THR. | ASP.GLU.THR. | ✘ | 4 | 4 | 2 | ✘ |
| 2D0P-CA-2 | CA | Ca²⁺ | D2E1T1 | ASP.GLU.THR. | ASP.GLU.THR. | ✘ | 4 | 4 | 2 | ✘ |
| 4YQW-CA-1 | CA | Ca²⁺ | D2E1T1 | ASP.DT.GLU. | ASP.DCP.DT.GLU.HOH. | ✘ | 4 | 6 | 2 | ✔ |
| 4YR0-CA-1 | CA | Ca²⁺ | D2E1T1 | ASP.DT.GLU. | ASP.DCP.DT.GLU.HOH. | ✘ | 4 | 6 | 2 | ✔ |
| 4YR2-CA-1 | CA | Ca²⁺ | D2E1T1 | ASP.DT.GLU. | ASP.DT.DTP.GLU. | ✘ | 4 | 5 | 2 | ✔ |