| Id | Element | Ion | Binding family | Amino acids or nucleotide residues names | All bound residues | Is homomer | Number of bound amino acids or nucleotide residues | Number of all bound residues | Number of coordinating chains | Representative |
|---|---|---|---|---|---|---|---|---|---|---|
| 3NH1-MG-1 | MG | Mg²⁺ | D1E1G1 | ASP.DG.GLU. | ASP.DG.GLU. | ✘ | 3 | 3 | 2 | ✔ |
| 3NH1-MG-2 | MG | Mg²⁺ | D1E1G1 | ASP.DG.GLU. | ASP.DG.GLU. | ✘ | 3 | 3 | 2 | ✘ |
| 3KSB-MG-1 | MG | Mg²⁺ | D1E1G1 | ASP.DG.GLU. | ASP.DG.GLU. | ✘ | 3 | 3 | 2 | ✔ |
| 1MUH-MN-1 | MN | Mn²⁺ | D1E1G1 | ASP.DG.GLU. | ASP.DG.GLU.HOH. | ✘ | 3 | 5 | 2 | ✘ |
| 1MUH-MN-2 | MN | Mn²⁺ | D1E1G1 | ASP.DG.GLU. | ASP.DG.GLU.HOH. | ✘ | 3 | 5 | 2 | ✘ |
| 4K1T-ZN-1 | ZN | Zn²⁺ | D1E1G1 | ASP.GLU.GLY. | ASP.GLU.GLY. | ✔ | 3 | 3 | 3 | ✔ |
| 4K1T-ZN-8 | ZN | Zn²⁺ | D1E1G1 | ASP.GLU.GLY. | ASP.HOH.SO4. | ✔ | 3 | 3 | 3 | ✘ |
| 4K1T-ZN-13 | ZN | Zn²⁺ | D1E1G1 | ASP.GLU.GLY. | GLY.HIS. | ✔ | 3 | 2 | 3 | ✔ |
| 4L73-CA-2 | CA | Ca²⁺ | D1E1G1 | ASP.GLU.GLY. | ASP.GLU.GLY.HOH. | ✔ | 3 | 5 | 2 | ✔ |
| 4L73-CA-3 | CA | Ca²⁺ | D1E1G1 | ASP.GLU.GLY. | ASP.GLU.GLY.HOH. | ✔ | 3 | 5 | 2 | ✔ |
| 4L76-CA-1 | CA | Ca²⁺ | D1E1G1 | ASP.GLU.GLY. | ASP.GLU.GLY. | ✔ | 3 | 3 | 2 | ✔ |
| 5CDP-MN-1 | MN | Mn²⁺ | D1E1G1 | ASP.DG.GLU. | ASP.HOH. | ✘ | 3 | 6 | 2 | ✔ |
| 6QTK-MN-1 | MN | Mn²⁺ | D1E1G1 | ASP.DG.GLU. | ASP.DG.GLU.HOH. | ✘ | 3 | 6 | 2 | ✔ |
| 6QTK-MN-2 | MN | Mn²⁺ | D1E1G1 | ASP.DG.GLU. | ASP.DG.GLU.HOH. | ✘ | 3 | 5 | 2 | ✘ |
| 4WFF-CA-1 | CA | Ca²⁺ | D1E1G1 | ASP.GLU.GLY. | ASP.GLU.GLY.HOH. | ✔ | 3 | 5 | 2 | ✘ |
| 2OA8-CA-3 | CA | Ca²⁺ | D1E1G1 | ASP.DG.GLU. | ASP.DG.GLU. | ✘ | 3 | 3 | 2 | ✔ |
| 2D00-CA-3 | CA | Ca²⁺ | D1E1G1 | ASP.GLU.GLY. | ASP.GLU.GLY.HOH. | ✔ | 3 | 4 | 2 | ✘ |
| 2D00-CA-4 | CA | Ca²⁺ | D1E1G1 | ASP.GLU.GLY. | ASP.GLU.GLY.HOH. | ✔ | 3 | 4 | 2 | ✘ |
| 3MXI-CA-1 | CA | Ca²⁺ | D1E1G1 | ASP.DG.GLU. | ASP.DG.GLU. | ✘ | 3 | 3 | 2 | ✔ |
| 3ODH-CA-3 | CA | Ca²⁺ | D1E1G1 | ASP.DG.GLU. | ASP.DG.GLU.HOH. | ✘ | 3 | 6 | 2 | ✔ |