| Id | Element | Ion | Binding family | Amino acids or nucleotide residues names | All bound residues | Is homomer | Number of bound amino acids or nucleotide residues | Number of all bound residues | Number of coordinating chains | Representative |
|---|---|---|---|---|---|---|---|---|---|---|
| 4K4H-CA-1 | CA | Ca²⁺ | C1D3 | ASP.DC. | HOH.SER. | ✘ | 4 | 5 | 2 | ✘ |
| 4K4I-CA-3 | CA | Ca²⁺ | C1D3 | ASP.DC. | 1RY.ASP.DC. | ✘ | 4 | 5 | 2 | ✘ |
| 5VRX-CA-1 | CA | Ca²⁺ | C1D3 | ASP.DC. | ASP.DC.HOH.TTP. | ✘ | 4 | 6 | 2 | ✔ |
| 5VRW-CA-1 | CA | Ca²⁺ | C1D3 | ASP.DC. | ASP.DC.TTP. | ✘ | 4 | 5 | 2 | ✘ |
| 5CWR-CA-1 | CA | Ca²⁺ | C1D3 | ASP.DC. | ASP.DC.DCP.HOH. | ✘ | 4 | 6 | 2 | ✘ |
| 4UB4-CA-1 | CA | Ca²⁺ | C1D3 | ASP.DC. | ASP.DC.DGT.HOH. | ✘ | 4 | 6 | 2 | ✘ |
| 4UBC-CA-1 | CA | Ca²⁺ | C1D3 | ASP.DC. | 8DG.ASP.DC.HOH. | ✘ | 4 | 6 | 2 | ✘ |
| 5HRB-MN-1 | MN | Mn²⁺ | C1D3 | ASP.DC. | ASP.DC. | ✘ | 4 | 4 | 2 | ✔ |
| 7RBK-MG-1 | MG | Mg²⁺ | C1D3 | ASP.DC. | ASP.DCP.HOH.PPV. | ✘ | 4 | 5 | 2 | ✘ |
| 7RBJ-MG-1 | MG | Mg²⁺ | C1D3 | ASP.DC. | ASP.DC.DCP.HOH. | ✘ | 4 | 6 | 2 | ✘ |
| 7M4E-MG-1 | MG | Mg²⁺ | C1D3 | ASP.DC. | ASP.DC.DCP.HOH. | ✘ | 4 | 6 | 2 | ✔ |
| 7M0A-MG-1 | MG | Mg²⁺ | C1D3 | ASP.DC. | ASP.DC.HOH.TTP. | ✘ | 4 | 6 | 2 | ✔ |
| 7M0B-MG-1 | MG | Mg²⁺ | C1D3 | ASP.DC. | ASP.DC.DUP.HOH. | ✘ | 4 | 6 | 2 | ✔ |
| 7M07-MG-1 | MG | Mg²⁺ | C1D3 | ASP.DC. | ASP.DC.DUP.HOH. | ✘ | 4 | 6 | 2 | ✔ |
| 7M09-MG-1 | MG | Mg²⁺ | C1D3 | ASP.DC. | ASP.DC.DUP.HOH. | ✘ | 4 | 6 | 2 | ✔ |
| 7RBH-CA-1 | CA | Ca²⁺ | C1D3 | ASP.DC. | ASP.DC.DCP.HOH. | ✘ | 4 | 6 | 2 | ✔ |