| Id | Element | Ion | Binding family | Amino acids or nucleotide residues names | All bound residues | Is homomer | Number of bound amino acids or nucleotide residues | Number of all bound residues | Number of coordinating chains | Representative |
|---|---|---|---|---|---|---|---|---|---|---|
| 4YMO-MN-1 | MN | Mn²⁺ | A1D3 | ASP.DA. | 0KX.ASP.DA.HOH. | ✘ | 4 | 6 | 2 | ✘ |
| 5TXX-CA-1 | CA | Ca²⁺ | A1D3 | ASP.DA. | ASP.DA.HOH.TTP. | ✘ | 4 | 6 | 2 | ✘ |
| 6P1S-MN-1 | MN | Mn²⁺ | A1D3 | ASP.DA. | A.ASP.DA. | ✘ | 4 | 5 | 2 | ✔ |
| 8ICK-MN-2 | MN | Mn²⁺ | A1D3 | ASP.DA. | ASP.DA. | ✘ | 4 | 4 | 2 | ✔ |
| 5VS1-CA-1 | CA | Ca²⁺ | A1D3 | ASP.DA. | ASP.DA.TTP. | ✘ | 4 | 5 | 2 | ✔ |
| 5F55-MN-1 | MN | Mn²⁺ | A1D3 | ASP.DA. | ASP.DA. | ✘ | 4 | 4 | 2 | ✔ |
| 5F55-MN-2 | MN | Mn²⁺ | A1D3 | ASP.DA. | ASP.DA. | ✘ | 4 | 4 | 2 | ✔ |
| 6VF0-MG-1 | MG | Mg²⁺ | A1D3 | ASP.DA. | 8GT.ASP.DA.HOH. | ✘ | 4 | 6 | 2 | ✔ |
| 7KSW-MG-1 | MG | Mg²⁺ | A1D3 | ASP.DA. | ASP.DA.DGT.HOH. | ✘ | 4 | 6 | 2 | ✔ |
| 7S9P-MN-1 | MN | Mn²⁺ | A1D3 | ASP.DA. | ASP.DA.HOH.XC5. | ✘ | 4 | 6 | 2 | ✔ |
| 7KTA-CA-1 | CA | Ca²⁺ | A1D3 | ASP.DA. | 8DG.ASP.DA.HOH. | ✘ | 4 | 6 | 2 | ✔ |
| 7KST-MN-1 | MN | Mn²⁺ | A1D3 | ASP.DA. | ASP.DA.DGT.HOH. | ✘ | 4 | 6 | 2 | ✔ |
| 7KSS-CA-1 | CA | Ca²⁺ | A1D3 | ASP.DA. | ASP.DA.DGT.HOH. | ✘ | 4 | 6 | 2 | ✔ |
| 7KT3-CA-1 | CA | Ca²⁺ | A1D3 | ASP.DA. | 8DG.ASP.DA.HOH. | ✘ | 4 | 6 | 2 | ✘ |
| 7KSZ-CA-1 | CA | Ca²⁺ | A1D3 | ASP.DA. | ASP.DA.DGT.HOH. | ✘ | 4 | 6 | 2 | ✔ |
| 6VF3-MN-1 | MN | Mn²⁺ | A1D3 | ASP.DA. | 8GT.ASP.DA.HOH. | ✘ | 4 | 6 | 2 | ✘ |
| 6VEZ-CA-1 | CA | Ca²⁺ | A1D3 | ASP.DA. | 8GT.ASP.DA.HOH. | ✘ | 4 | 6 | 2 | ✘ |
| 6VF7-MN-1 | MN | Mn²⁺ | A1D3 | ASP.DA. | 8DG.ASP.DA.HOH. | ✘ | 4 | 6 | 2 | ✔ |