| Id | Element | Ion | Binding family | Amino acids or nucleotide residues names | All bound residues | Is homomer | Number of bound amino acids or nucleotide residues | Number of all bound residues | Number of coordinating chains | Representative |
|---|---|---|---|---|---|---|---|---|---|---|
| 3RJF-MG-1 | MG | Mg²⁺ | A1D3 | ASP.DA. | ASP.DA.F2A.HOH. | ✘ | 4 | 6 | 2 | ✘ |
| 3RJH-MG-1 | MG | Mg²⁺ | A1D3 | ASP.DA. | 6CF.ASP.DA.HOH. | ✘ | 4 | 6 | 2 | ✘ |
| 3RJI-MG-1 | MG | Mg²⁺ | A1D3 | ASP.DA. | 6CF.ASP.DA.HOH. | ✘ | 4 | 6 | 2 | ✘ |
| 4NLK-MG-1 | MG | Mg²⁺ | A1D3 | ASP.DA. | 0KX.ASP.DA. | ✘ | 4 | 5 | 2 | ✘ |
| 4M04-MG-1 | MG | Mg²⁺ | A1D3 | ASP.DA. | ASP.DA.DUP.HOH. | ✘ | 4 | 6 | 2 | ✘ |
| 6E53-MG-1 | MG | Mg²⁺ | A1D3 | ASP.DA. | ASP.DA. | ✘ | 4 | 4 | 2 | ✔ |
| 5TWQ-MN-1 | MN | Mn²⁺ | A1D3 | ASP.DA. | ASP.DA.HOH.U. | ✘ | 4 | 6 | 2 | ✔ |
| 5TWS-NA-1 | NA | Na⁺ | A1D3 | ASP.DA. | ASP.DA.HOH.U. | ✘ | 4 | 6 | 2 | ✘ |
| 4KLQ-MN-1 | MN | Mn²⁺ | A1D3 | ASP.DA. | ASP.DA.DTP.HOH. | ✘ | 4 | 6 | 2 | ✘ |
| 4KLS-MN-1 | MN | Mn²⁺ | A1D3 | ASP.DA. | ASP.DA.DTP.HOH. | ✘ | 4 | 6 | 2 | ✔ |
| 4NXZ-MN-1 | MN | Mn²⁺ | A1D3 | ASP.DA. | 1FZ.ASP.DA. | ✘ | 4 | 5 | 2 | ✘ |
| 4PHD-MN-1 | MN | Mn²⁺ | A1D3 | ASP.DA. | 0KX.ASP.DA.HOH. | ✘ | 4 | 6 | 2 | ✘ |
| 4PGX-MN-1 | MN | Mn²⁺ | A1D3 | ASP.DA. | 1FZ.ASP.DA.HOH. | ✘ | 4 | 6 | 2 | ✔ |
| 4Z6E-MN-1 | MN | Mn²⁺ | A1D3 | ASP.DA. | 1FZ.ASP.DA.HOH. | ✘ | 4 | 6 | 2 | ✘ |
| 4Z6F-MN-1 | MN | Mn²⁺ | A1D3 | ASP.DA. | 1FZ.ASP.DA.HOH. | ✘ | 4 | 6 | 2 | ✘ |
| 5VS2-CA-1 | CA | Ca²⁺ | A1D3 | ASP.DA. | ASP.DA.HOH.TTP. | ✘ | 4 | 6 | 2 | ✔ |
| 6AK9-CA-1 | CA | Ca²⁺ | A1D3 | ASP.DA. | 8DG.ASP.DA.HOH. | ✘ | 4 | 6 | 2 | ✘ |
| 6AK8-CA-1 | CA | Ca²⁺ | A1D3 | ASP.DA. | 8DG.ASP.DA.HOH. | ✘ | 4 | 6 | 2 | ✔ |
| 6AKH-MN-1 | MN | Mn²⁺ | A1D3 | ASP.DA. | ASP.DA.DUP.HOH. | ✘ | 4 | 6 | 2 | ✘ |
| 6CU9-MN-1 | MN | Mn²⁺ | A1D3 | ASP.DA. | 0KX.ASP.DA.HOH. | ✘ | 4 | 6 | 2 | ✔ |